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Skills

Real Estate

Finance

Data Science

Online Courses

Main

Paul Yuchao Dong

Vice President of Spring Asset. as a CFA Charterholder, I have been working as a real estate finance professional for 12 years. Studied at Tsinghua University and University of Hong Kong. I had worked on IPO, disposal of significant commercial property and offshore acquisitions. I had been working with my current employer Spring Asset Management for more than 5 years, focusing on financing and investment.

I am broadly interested in data munging and visualization, Bayesian data analysis and mathematics.

Research Experience

Professor

School of Basic Medical Sciences

Southern Medical University

present - 2018

  • Associate director, Department of Bioinformatics

Post-doctoral Fellow

State Key Laboratory of Infectious Diseases

The University of Hong Kong

2018 - 2017

Bioinformatician

Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes

Jinan University

2013 - 2009

Education

PhD., Bioinformaitcs

The University of Hong Kong

Hong Kong, CN

2017 - 2013

  • Thesis: Big-data computational methods for studying molecular evolution: from accurate genome assembly to phylogenetic analysis and data integration

M.S., Biochemistry and Molecular Biology

Anhui Medical University

Hefei, CN

2009 - 2006

  • Thesis: miRNA靶基因<U+8BA1>算分析新方法及其<U+5E94>用研究

B.S., Biotechnology

South China Agricultural University

Guangzhou, CN

2005 - 2001

南方<U+533B>科大<U+5B66>高<U+5C42>次人才“不忘初心 牢<U+8BB0>使命”<U+5B66><U+4E60>教育

延安干部培<U+8BAD><U+5B66>院

Yan’an, CN

2018

Train the Trainers

Institut Pasteur

Paris, FR

2015


Certificate

Certificate of Teaching and Learning in Higher Education

Centre for Enhancement of Teaching and Learning

The University of Hong Kong

2015

Teaching Experience

BMB209: Workshops in Applied Bioinformatics

Department of Biochemistry and Molecular Biology

University of Southern Denmark

2019

  • PhD level class, invited lecture

生物信息<U+5B66>科研<U+8BAD><U+7EC3>

School of Basic Medical Sciences

Southern Medical University

  • Undergraduate level class

基因<U+7EC4><U+5B66>

School of Basic Medical Sciences

Southern Medical University

  • Undergraduate level class

基<U+7840><U+533B><U+5B66>新<U+8FDB>展<U+8BB2>座

School of Basic Medical Sciences

Southern Medical University

  • Undergraduate level class

功能蛋白<U+8D28>研究

College of Life Science and Technology

Jinan University

2012 - 2011

  • Graduate level class

Grants

南方<U+533B>科大<U+5B66>第三<U+5C42>次人才引<U+8FDB>科研<U+9879>目 (G618289088)

PI, CNY ¥1,500,000

N/A

2020 - 2018

hnRNPK蛋白在<U+8C03>控人肺癌<U+7EC6>胞周期胞<U+8D28>分裂中的作用研究 (21613414)

PI, CNY ¥100,000, 中央高校基本科研<U+4E1A><U+52A1><U+8D39><U+4E13><U+9879><U+8D44>金

N/A

2013

Hela<U+7EC6>胞周期<U+52A8><U+6001>蛋白<U+8D28><U+7EC4><U+5B66>分析 (21611303)

PI, CNY ¥20,000, 中央高校基本科研<U+4E1A><U+52A1><U+8D39><U+4E13><U+9879><U+8D44>金

N/A

2011

Books

生物信息<U+5B66>II

功能蛋白<U+8D28>研究》. 385-425. 何<U+5E86>瑜(主<U+7F16>),科<U+5B66>出版社 (“十二五”<U+56FD>家重<U+70B9><U+56FE><U+4E66>出版<U+89C4>划<U+9879>目)

N/A

2012

  • 余光<U+521B>

Publications

  • Citation = 3649
  • H-index = 16
  • I10-index = 22

treeio: an R package for phylogenetic tree input and output with richly annotated and associated data

Molecular Biology and Evolution. 2019, accepted

N/A

2019

  • LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, BR Jones, T Bradley, H Zhu, Y Guan, Y Jiang, G Yu*
  • Impact Factor = 14.797

Two methods for mapping and visualizing associated data on phylogeny using ggtree1

Molecular Biology and Evolution. 2018, 35(12):3041-3043.

N/A

2018

  • G Yu*, TTY Lam, H Zhu, Y Guan*
  • Impact Factor = 14.797

Using meshes for MeSH term enrichment and semantic analyses2

Bioinformatics. 2018, 34(21):3766–3767.

N/A

  • G Yu

ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data3

Methods in Ecology and Evolution. 2017, 8(1):28-36

N/A

2017

  • G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*
  • ESI Highly Cited Paper

ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization4

Molecular BioSystems. 2016, 12(2):477-479

N/A

2016

  • G Yu, QY He*
  • ESI Highly Cited Paper

Integrated Translatomics with Proteomics to Identify Novel Iron–Transporting Proteins in Streptococcus pneumoniae5

Frontiers in Microbiology. 2016, 7:78

N/A

  • XY Yang, K He, G Du, X Wu, G Yu, Y Pan, G Zhang*, X Sun*, QY He*

Genetic characterization of highly pathogenic H5 influenza viruses from poultry in Taiwan, 20156

Infection, Genetics and Evolution. 2016, 38:96-100

N/A

  • PY Huang, CCD Lee, CH Yip, CL Cheung, G Yu, TTY Lam, DK Smith, H Zhu*, Y Guan*

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparision and visualization7

Bioinformatics. 2015, 31(14):2382-2383

N/A

2015

  • G Yu*, LG Wang, QY He*
  • ESI Highly Cited Paper

DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis8

Bioinformatics. 2015, 31(4):608-609

N/A

  • G Yu*, LG Wang, GR Yan, QY He*

ACK1 Promotes Gastric Cancer Epithelial-Mesenchymal Transition and Metastasis through AKT-POU2F1-ECD Signaling9

Journal of Pathology. 2015, 236(2):175-185

N/A

  • SH Xu, JZ Huang, ML Xu, G Yu, XF Yin, D Chen*, GR Yan*

Proteomic analysis on the copper resistance of Streptococcus pneumonia10

Metallomics. 2015, 7(3):448-454

N/A

  • Z Guo, J Han, XY Yang, K Cao, K He, G Du, G Zeng, L Zhang, G Yu, Z Sun, QY He*, X Sun*

Proteomic analysis on the antibacterial activity of a Ru(II) complex against Strepococcus pneumonia11

Journal of Proteomics. 2015, 115:107-116

N/A

  • XY Yang, L Zhang, J Liu, N Li, G Yu, K Cao, J Han, G Zeng, Y Pan, X Sun*, QY He*

Proteomic analysis of putative heme-binding proteins in Streptococcus pyogenes12

Metallomics. 2014, 6(8):1451-1459

N/A

2014

  • N Wang#, J Zhang#, L Zhang, XY Yang, N Li, G Yu, J Han, K Cao, Z Guo, X Sun*, QY He*

Putative cobalt- and nickel-binding proteins and motifs in Streptococcus pneumonia13

Metallomics. 2013, 5(7):928-935

N/A

2013

  • X Sun#, G Yu#, Q Xu, N Li, C Xiao, X Yin, K Cao, J Han, QY He*

A novel andrographolide derivative AL-1 exerts its cytotoxicity on K562 cells through a ROS-dependent mechanism14

Proteomics, 2013, 13(1):169-178

N/A

  • YY Zhu#, G Yu#, Y Zhang, Z Xu, YQ Huang, GR Yan*, QY He*

A DNA-Based Semantic Fusion Model for Remote Sensing Data15

PLoS One. 2013, 8(10):e77090

N/A

  • H Sun*, J Weng, G Yu, RH Massawe

Quantitative Proteomics Characterization on the Anti-tumor Effects of Isodexyelephantopin against Nasopharyngeal Carcinoma16

Proteomics. 2013, 13(21):3222-3232

N/A

  • GR Yan#, Z Tan#, Y Wang, ML Xu, G Yu, Y Li*, QY He*

Design, SAR, angiogenic activities evaluation and pro-angiogenic mechanism of new marine cyclopeptide analogs17

Current Medicinal Chemistry. 2013, 20(9):1183-1194

N/A

  • J Li, X Lu, Q Wu, G Yu, Z Xu, L Qiu, Z Pei, Y Lin, J Pang*

Proteomic investigation of the interactome of FMNL1 in hematopoietic cells unveils a role in calcium-dependent membrane plasticity18

Journal of Proteomics. 2013, 78:72-82

N/A

  • Y Han, G Yu, H Sarioglu, A Caballero-Martinez, F Schlott, M Ueffing, H Haase, C Peschel, AM Krackhardt*

LXtoo: an integrated live Linux distribution for the bioinformatics community19

BMC Research Notes. 2012, 5(1):360

N/A

2012

  • G Yu#, LG Wang#, XH Meng, QY He*

clusterProfiler: an R package for comparing biological themes among gene clusters20

OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287

N/A

  • G Yu, LG Wang, Y Han, QY He*
  • ESI Highly Cited Paper

Cellular MicroRNA let-7c Inhibits M1 Protein Expression of the H1N1 Influenza A Virus in Infected Human Lung Epithelial Cells21

Journal of Cellular and Molecular Medicine. 2012, 16(10):2539-2546

N/A

  • Y Ma#, J Yang#, X Fan#, H Zhao, W Hu, Z Li, G Yu, X Ding, J Wang, X Bo, X Zheng, Z Zhou*, S Wang*

Genistein-induced mitotic arrest of gastric cancer cells by downregulating KIF20A, a proteomics study22

Proteomics. 2012, 12(14):2391-2399

N/A

  • GR Yan#, FY Zhou#, BL Dang, Y Zhang, G Yu, X Liu, QY He*

Functional similarity analysis of human virus-encoded miRNAs23

Journal of Clinical Bioinformatics. 2011, 1(1):15

N/A

2011

  • G Yu, QY He*

A new method for measuring functional similarity of microRNAs24

Journal of Integrated OMICS. 2011, 1(1):49-54

N/A

  • G Yu#, CL Xiao#, X Bo, CH Lu, Y Qin, S Zhan, QY He*

Phosphoproteome profile of human lung cancer cell line A54925

Molecular BioSystems. 2011, 7(2):472-479

N/A

  • G Yu#, CL Xiao#, CH Lu#, HT Jia, F Ge, W Wang, XF Yin, HL Jia, JX He*, QY He*

Proteomic Analysis of Membrane Proteins from Streptococcus pneumoniae with Multiple Separation Methods plus High Accuracy Mass Spectrometry26

OMICS: A Journal of Integrative Biology. 2011, 15(10):683-694

N/A

  • X Sun#, XY Yang#, XF Yin, G Yu, CL Xiao, X He, QY He*

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products27

Bioinformatics. 2010, 26(7):976-978

N/A

2010

  • G Yu#, F Li#, Y Qin, X Bo*, Y Wu, S Wang*
  • ESI Highly Cited Paper

<U+7ED3>合基因<U+7EC4>分析<U+9884><U+6D4B>炎症相<U+5173>miRNA及其靶<U+6807>

<U+519B>事<U+533B><U+5B66>科<U+5B66>院院刊. 2009, 33(3):245-247

N/A

2009

  • 余光<U+521B>,王超,<U+8BB8>尹,伯<U+6653>晨,王升<U+542F>*,秦宜德*

依<U+8D56>于5’端非<U+7F16><U+7801><U+533A>高<U+7EA7><U+7ED3>构的真核生物mRNA翻<U+8BD1><U+8C03>控

中<U+56FD>生物化<U+5B66>与分子生物<U+5B66><U+62A5>. 2007, 23(11):881-887

N/A

2007

  • 余光<U+521B>,秦宜德,伯<U+6653>晨,王升<U+542F>*

Conference proceedings

R<U+8BED>言在生物信息<U+5B66><U+6570>据可<U+89C6>化中的<U+5E94>用

第八<U+5C4A>南方<U+533B>院博士<U+8BBA><U+575B>之《研之有信》, Oct 2019

Southern Medical University

2019

Data integration and visualization of phylogenetic trees

Managing Zoonotic Infections in the era of One Health, Oct 2019

Guangzhou Medical University

Two methods for mapping and visualizing associated data on phylogeny using ggtree

第一<U+5C4A>南方<U+533B>科大<U+5B66>基<U+7840><U+533B><U+5B66><U+5B66><U+672F>年<U+4F1A>, Jan 2019

Southern Medical University

Data integration and visualization of phylogenetic trees

The 3rd South Lake Innovation Forum for International Young Talents, May 2018

Huazhong Agricultural University

2018

ggtree for tree visualization & annotation

Phylogenetic tree visualization workshop/hackathon, May 2017

The Field Museum of Natural History

2017

Computational Methods in Ecology and Evolution

The Second International Workshop on Environmental Microbiomes, Apr 2017

Sun Yat-sen University

ggtree for visualization and annotation of phylogenetic trees

The 9th China-R Conference, May 2016

Renmin University of China

2016